bioio_conversion package

Subpackages

• bioio_conversion.converters package
  • Submodules
  • bioio_conversion.converters.batch_converter module
    • BatchConverter
      • BatchConverter.from_csv()
      • BatchConverter.from_directory()
      • BatchConverter.from_list()
      • BatchConverter.run_jobs()
  • bioio_conversion.converters.ome_zarr_converter module
    • OmeZarrConverter
      • OmeZarrConverter.convert()
  • Module contents
    • BatchConverter
      • BatchConverter.from_csv()
      • BatchConverter.from_directory()
      • BatchConverter.from_list()
      • BatchConverter.run_jobs()
    • OmeZarrConverter
      • OmeZarrConverter.convert()

Submodules

bioio_conversion.cluster module

class bioio_conversion.cluster.Cluster(n_workers: int = 4)

Bases: object

A custom Dask cluster class that allows for the creation and management of a Dask cluster.

start() → Client

Start the Dask LocalCluster and return a Client. Registers clean shutdown on exit or SIGINT/SIGTERM.

Module contents

Top-level package initialization. Exposes main utilities for easy import.

class bioio_conversion.Cluster(n_workers: int = 4)

Bases: object

A custom Dask cluster class that allows for the creation and management of a Dask cluster.

start() → Client

Start the Dask LocalCluster and return a Client. Registers clean shutdown on exit or SIGINT/SIGTERM.