bioio_conversion.converters.BatchConverter

class bioio_conversion.converters.BatchConverter(*, converter_key: str = 'ome-zarr', default_opts: Dict[str, Any] | None = None)

BatchConverter orchestrates bulk conversions of image files using a specified converter backend.

Supports three input modes:

• CSV-driven: each row defines a conversion job

• Directory-driven: scan up to max_depth for matching files

• List-driven: explicit list of file paths

Default parameters for all jobs may be provided via default_opts.

__init__(*, converter_key: str = 'ome-zarr', default_opts: Dict[str, Any] | None = None)

Initialize the BatchConverter.

Parameters:

converter_keystr

Key to select the converter backend (must exist in _CONVERTERS).

default_optsdict, optional

Shared default options for each job (e.g. destination, tbatch, overwrite).

Methods

__init__(*[, converter_key, default_opts])	Initialize the BatchConverter.
from_csv(csv_path)	Parse a CSV file into a list of job option dicts.
from_directory(directory, *[, max_depth, ...])	Recursively find files matching pattern up to max_depth levels.
from_list(paths)	Build jobs from an explicit list of file paths.
run_jobs(jobs)	Execute each job: must include 'source'; merges defaults and job params.