bioio

• bioio package
  • Subpackages
    • bioio.writers package
      • Module contents
  • Submodules
  • bioio.array_like_reader module
    • ArrayLikeReader
      • ArrayLikeReader.physical_pixel_sizes
      • ArrayLikeReader.scenes
    • ArrayLikeReaderMetadata
      • ArrayLikeReaderMetadata.get_reader()
      • ArrayLikeReaderMetadata.get_supported_extensions()
  • bioio.bio_image module
    • BioImage
      • BioImage.channel_names
      • BioImage.current_resolution_level
      • BioImage.current_scene
      • BioImage.current_scene_index
      • BioImage.dask_data
      • BioImage.data
      • BioImage.determine_plugin()
      • BioImage.dims
      • BioImage.dtype
      • BioImage.get_dask_stack()
      • BioImage.get_image_dask_data()
      • BioImage.get_image_data()
      • BioImage.get_mosaic_tile_position()
      • BioImage.get_mosaic_tile_positions()
      • BioImage.get_stack()
      • BioImage.get_xarray_dask_stack()
      • BioImage.get_xarray_stack()
      • BioImage.metadata
      • BioImage.mosaic_tile_dims
      • BioImage.ome_metadata
      • BioImage.physical_pixel_sizes
      • BioImage.reader
      • BioImage.resolution_level_dims
      • BioImage.resolution_levels
      • BioImage.save()
      • BioImage.scale
      • BioImage.scenes
      • BioImage.set_resolution_level()
      • BioImage.set_scene()
      • BioImage.shape
      • BioImage.standard_metadata
      • BioImage.time_interval
      • BioImage.xarray_dask_data
      • BioImage.xarray_data
    • imread()
    • imread_dask()
    • imread_xarray()
    • imread_xarray_dask()
  • bioio.ome_utils module
    • dtype_to_ome_type()
    • generate_ome_channel_id()
    • generate_ome_image_id()
    • ome_to_numpy_dtype()
  • bioio.plugins module
    • PluginEntry
      • PluginEntry.entrypoint
      • PluginEntry.metadata
      • PluginEntry.timestamp
    • PluginSupport
      • PluginSupport.error
      • PluginSupport.supported
    • check_type()
    • dump_plugins()
    • get_array_like_plugin()
    • get_dependency_version_range_for_distribution()
    • get_plugins()
    • insert_sorted_by_timestamp()
    • plugin_feasibility_report()
  • Module contents
    • BioImage
      • BioImage.channel_names
      • BioImage.current_resolution_level
      • BioImage.current_scene
      • BioImage.current_scene_index
      • BioImage.dask_data
      • BioImage.data
      • BioImage.determine_plugin()
      • BioImage.dims
      • BioImage.dtype
      • BioImage.get_dask_stack()
      • BioImage.get_image_dask_data()
      • BioImage.get_image_data()
      • BioImage.get_mosaic_tile_position()
      • BioImage.get_mosaic_tile_positions()
      • BioImage.get_stack()
      • BioImage.get_xarray_dask_stack()
      • BioImage.get_xarray_stack()
      • BioImage.metadata
      • BioImage.mosaic_tile_dims
      • BioImage.ome_metadata
      • BioImage.physical_pixel_sizes
      • BioImage.reader
      • BioImage.resolution_level_dims
      • BioImage.resolution_levels
      • BioImage.save()
      • BioImage.scale
      • BioImage.scenes
      • BioImage.set_resolution_level()
      • BioImage.set_scene()
      • BioImage.shape
      • BioImage.standard_metadata
      • BioImage.time_interval
      • BioImage.xarray_dask_data
      • BioImage.xarray_data
    • DimensionNames
      • DimensionNames.Channel
      • DimensionNames.MosaicTile
      • DimensionNames.Samples
      • DimensionNames.SpatialX
      • DimensionNames.SpatialY
      • DimensionNames.SpatialZ
      • DimensionNames.Time
    • Dimensions
      • Dimensions.items()
      • Dimensions.order
      • Dimensions.shape
    • PhysicalPixelSizes
      • PhysicalPixelSizes.X
      • PhysicalPixelSizes.Y
      • PhysicalPixelSizes.Z
    • Scale
      • Scale.C
      • Scale.T
      • Scale.X
      • Scale.Y
      • Scale.Z
    • StandardMetadata
      • StandardMetadata.FIELD_LABELS
      • StandardMetadata.binning
      • StandardMetadata.column
      • StandardMetadata.dimensions_present
      • StandardMetadata.image_size_c
      • StandardMetadata.image_size_t
      • StandardMetadata.image_size_x
      • StandardMetadata.image_size_y
      • StandardMetadata.image_size_z
      • StandardMetadata.imaged_by
      • StandardMetadata.imaging_datetime
      • StandardMetadata.objective
      • StandardMetadata.pixel_size_x
      • StandardMetadata.pixel_size_y
      • StandardMetadata.pixel_size_z
      • StandardMetadata.position_index
      • StandardMetadata.row
      • StandardMetadata.timelapse
      • StandardMetadata.timelapse_interval
      • StandardMetadata.to_dict()
      • StandardMetadata.total_time_duration
    • Writer
      • Writer.save()
    • plugin_feasibility_report()