Index B | C | D | F | G | I | M | N | O | P | R | S | T | U | X | Y | Z B binning (bioio_base.standard_metadata.StandardMetadata attribute) bioio_base module bioio_base.constants module bioio_base.dimensions module bioio_base.exceptions module bioio_base.image_container module bioio_base.io module bioio_base.noop_reader module bioio_base.reader module bioio_base.reader_metadata module bioio_base.standard_metadata module bioio_base.test_utilities module bioio_base.transforms module bioio_base.types module C C (bioio_base.types.Scale attribute) Channel (bioio_base.dimensions.DimensionNames attribute) channel_names (bioio_base.image_container.ImageContainer property) (bioio_base.reader.Reader property) check_can_serialize_image_container() (in module bioio_base.test_utilities) check_local_file_not_open() (in module bioio_base.test_utilities) column (bioio_base.standard_metadata.StandardMetadata attribute) ConflictingArgumentsError current_resolution_level (bioio_base.image_container.ImageContainer property) (bioio_base.reader.Reader property) current_scene (bioio_base.image_container.ImageContainer property) (bioio_base.reader.Reader property) current_scene_index (bioio_base.image_container.ImageContainer property) (bioio_base.reader.Reader property) D dask_data (bioio_base.image_container.ImageContainer property) (bioio_base.reader.Reader property) data (bioio_base.image_container.ImageContainer property) (bioio_base.reader.Reader property) DimensionNames (class in bioio_base.dimensions) Dimensions (class in bioio_base.dimensions) dimensions_present (bioio_base.standard_metadata.StandardMetadata attribute) dims (bioio_base.image_container.ImageContainer property) (bioio_base.reader.Reader property) dtype (bioio_base.image_container.ImageContainer property) (bioio_base.reader.Reader property) F FIELD_LABELS (bioio_base.standard_metadata.StandardMetadata attribute) G generate_stack() (in module bioio_base.transforms) get_dask_stack() (bioio_base.reader.Reader method) get_image_dask_data() (bioio_base.image_container.ImageContainer method) (bioio_base.reader.Reader method) get_image_data() (bioio_base.image_container.ImageContainer method) (bioio_base.reader.Reader method) get_mosaic_tile_position() (bioio_base.reader.Reader method) get_mosaic_tile_positions() (bioio_base.reader.Reader method) get_reader() (bioio_base.reader_metadata.ReaderMetadata static method) get_stack() (bioio_base.reader.Reader method) get_supported_extensions() (bioio_base.reader_metadata.ReaderMetadata static method) get_xarray_dask_stack() (bioio_base.reader.Reader method) get_xarray_stack() (bioio_base.reader.Reader method) I image_size_c (bioio_base.standard_metadata.StandardMetadata attribute) image_size_t (bioio_base.standard_metadata.StandardMetadata attribute) image_size_x (bioio_base.standard_metadata.StandardMetadata attribute) image_size_y (bioio_base.standard_metadata.StandardMetadata attribute) image_size_z (bioio_base.standard_metadata.StandardMetadata attribute) ImageContainer (class in bioio_base.image_container) imaged_by (bioio_base.standard_metadata.StandardMetadata attribute) imaging_date (bioio_base.standard_metadata.StandardMetadata attribute) InvalidDimensionOrderingError is_supported_image() (bioio_base.reader.Reader class method) items() (bioio_base.dimensions.Dimensions method) M metadata (bioio_base.image_container.ImageContainer property) (bioio_base.reader.Reader property) module bioio_base bioio_base.constants bioio_base.dimensions bioio_base.exceptions bioio_base.image_container bioio_base.io bioio_base.noop_reader bioio_base.reader bioio_base.reader_metadata bioio_base.standard_metadata bioio_base.test_utilities bioio_base.transforms bioio_base.types mosaic_dask_data (bioio_base.reader.Reader property) mosaic_data (bioio_base.reader.Reader property) mosaic_tile_dims (bioio_base.reader.Reader property) mosaic_xarray_dask_data (bioio_base.reader.Reader property) mosaic_xarray_data (bioio_base.reader.Reader property) MosaicTile (bioio_base.dimensions.DimensionNames attribute) N NoopReader (class in bioio_base.noop_reader) O objective (bioio_base.standard_metadata.StandardMetadata attribute) ome_metadata (bioio_base.reader.Reader property) order (bioio_base.dimensions.Dimensions property) P pathlike_to_fs() (in module bioio_base.io) physical_pixel_sizes (bioio_base.image_container.ImageContainer property) (bioio_base.reader.Reader property) PhysicalPixelSizes (class in bioio_base.types) pixel_size_x (bioio_base.standard_metadata.StandardMetadata attribute) pixel_size_y (bioio_base.standard_metadata.StandardMetadata attribute) pixel_size_z (bioio_base.standard_metadata.StandardMetadata attribute) position_index (bioio_base.standard_metadata.StandardMetadata attribute) R Reader (class in bioio_base.reader) ReaderMetadata (class in bioio_base.reader_metadata) reduce_to_slice() (in module bioio_base.transforms) reshape_data() (in module bioio_base.transforms) resolution_level_dims (bioio_base.reader.Reader property) resolution_levels (bioio_base.image_container.ImageContainer property) (bioio_base.reader.Reader property) row (bioio_base.standard_metadata.StandardMetadata attribute) run_image_container_checks() (in module bioio_base.test_utilities) run_image_file_checks() (in module bioio_base.test_utilities) run_multi_scene_image_read_checks() (in module bioio_base.test_utilities) run_no_scene_name_image_read_checks() (in module bioio_base.test_utilities) run_reader_mosaic_checks() (in module bioio_base.test_utilities) S Samples (bioio_base.dimensions.DimensionNames attribute) scale (bioio_base.image_container.ImageContainer property) (bioio_base.reader.Reader property) Scale (class in bioio_base.types) scenes (bioio_base.image_container.ImageContainer property) (bioio_base.noop_reader.NoopReader property) (bioio_base.reader.Reader property) set_resolution_level() (bioio_base.image_container.ImageContainer method) (bioio_base.reader.Reader method) set_scene() (bioio_base.image_container.ImageContainer method) (bioio_base.reader.Reader method) shape (bioio_base.dimensions.Dimensions property) (bioio_base.image_container.ImageContainer property) (bioio_base.reader.Reader property) SpatialX (bioio_base.dimensions.DimensionNames attribute) SpatialY (bioio_base.dimensions.DimensionNames attribute) SpatialZ (bioio_base.dimensions.DimensionNames attribute) standard_metadata (bioio_base.image_container.ImageContainer property) (bioio_base.reader.Reader property) StandardMetadata (class in bioio_base.standard_metadata) T T (bioio_base.types.Scale attribute) Time (bioio_base.dimensions.DimensionNames attribute) time_interval (bioio_base.image_container.ImageContainer property) (bioio_base.reader.Reader property) timelapse (bioio_base.standard_metadata.StandardMetadata attribute) timelapse_interval (bioio_base.standard_metadata.StandardMetadata attribute) to_dict() (bioio_base.standard_metadata.StandardMetadata method) total_time_duration (bioio_base.standard_metadata.StandardMetadata attribute) transpose_to_dims() (in module bioio_base.transforms) U UnexpectedShapeError UnsupportedFileFormatError X X (bioio_base.types.PhysicalPixelSizes attribute) (bioio_base.types.Scale attribute) xarray_dask_data (bioio_base.image_container.ImageContainer property) (bioio_base.reader.Reader property) xarray_data (bioio_base.image_container.ImageContainer property) (bioio_base.reader.Reader property) Y Y (bioio_base.types.PhysicalPixelSizes attribute) (bioio_base.types.Scale attribute) Z Z (bioio_base.types.PhysicalPixelSizes attribute) (bioio_base.types.Scale attribute)