Welcome to bioio’s documentation!#

Specific Doc Pages#

bioio.BioImage(image[, reader, ...])

BioImage takes microscopy image data types (files or arrays) of varying dimensions ("ZYX", "TCZYX", "CYX") and reads them as consistent 5D "TCZYX" ("Time-Channel-Z-Y-X") ordered array(s).

bioio.writers.OmeTiffWriter()

bioio.writers.OmeZarrWriter(uri)

Constructor.

bioio.writers.timeseries_writer.TimeseriesWriter()

A writer for timeseries Greyscale, RGB, or RGBA image data.

bioio.writers.two_d_writer.TwoDWriter()

A writer for image data is only 2 dimension with samples (RGB / RGBA) optional.

Indices and tables#